PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA218
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family RAV
Protein Properties Length: 223aa    MW: 24647.6 Da    PI: 8.0692
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA218genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.5e-142472155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Tp57577_TGAC_v2_mRNA218 24 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAALRFRG 72
                             89****9888.8*********3.....5**********99*************98 PP

2B336.96.6e-12154223153
                              EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyr 53 
                              f+k+ tpsdv+k++rlv+pk++ae+h                 +   +++  l +ed  g++W+++++y+
  Tp57577_TGAC_v2_mRNA218 154 FEKTVTPSDVGKLNRLVIPKQHAEKHfplnavavavsgegispSVAAAKGLLLNFEDVGGKVWRFRYSYW 223
                              99***************************99999999986666333448899***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-242478No hitNo description
PfamPF008474.3E-92472IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-162478IPR016177DNA-binding domain
PROSITE profilePS5103219.9022580IPR001471AP2/ERF domain
SMARTSM003803.3E-272586IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-202578IPR001471AP2/ERF domain
PRINTSPR003675.2E-52637IPR001471AP2/ERF domain
PRINTSPR003675.2E-54662IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.0E-19147223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-12152223IPR015300DNA-binding pseudobarrel domain
CDDcd100175.91E-13153223No hitNo description
PfamPF023621.4E-9154223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
ASVVVDPEIC GGSGEAESRK LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA  60
RAYDIAALRF RGKDAVTNSK TLTSVNNDTD EAEAEFLNSH SKSEIVDMLR KHTYDDELKQ  120
SMRDTCGGRQ RRNGELYGAA SRGACDAKAR EQLFEKTVTP SDVGKLNRLV IPKQHAEKHF  180
PLNAVAVAVS GEGISPSVAA AKGLLLNFED VGGKVWRFRY SYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-271512231171DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591822.11e-145AP2/ERF and B3 domain transcription factor
SwissprotQ9C6M52e-94RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLG7I4921e-145G7I492_MEDTR; AP2/ERF and B3 domain transcription factor
STRINGGLYMA10G34760.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-95RAV family protein